Existing plugins¶
This part documents the functionalities of Mastodon that have been implemented as plugins. They can typically be found in the Plugins submenu. The page below lists them all and links to specific documentation page for each plugin. Information on how to extend Mastodon yourself be creating such plugins can be found in the next part of this documentation.
Core plugins¶
The following plugins are available with the core of Mastodon.
Importers¶
Image data¶
Numerical feature operations¶
Selection operations¶
Detection & Tracking¶
Extra plugins¶
Track analysis, import and export add-ons (DeepLineage)¶
A collection of tools that extend Mastodon, e.g.:
Additional features for spots and links
Additional features for branches
Hierarchical clustering of lineage trees
Import of segmented images as tracks
Export of ellipsoids to segmented images
Export of TrackScheme branch view to GraphML
Dimensionality reduction (UMAP, PCA, t-SNE)
See Deep Lineage.
Track editing, analysis and export add-ons (Tomancak)¶
A collection of tools that extend Mastodon, e.g.:
Spot renaming and transformation
Sorting TrackScheme
Advanced track editing
Find, locate and edit tags
Export tree measurements
Merge projects
Spatial track matching
See Tomancak.