Video Tutorials

Here are links some video tutorials that can help you get started with the basics of using the platform.

Mastodon introduction

• Video from Virtual I2K 2024:

  • Introduction to Mastodon

  • Tracking (Detection & Linking)

  • Visualization in Blender (3D)

  • Feature Color Modes

  • Dimensionality Reduction

  • Hierarchical Clustering of Lineage Trees

Track analysis, import and export add-ons (DeepLineage)

• Mastodon Deep Lineage Release 0.0.1

  • Hierarchical Clustering of Lineage Trees

  • Label Image Export

  • Additional Numerical Features on Spot and BranchSpot Level

• Mastodon Deep Lineage Release 0.1.1

  • Import Spots from Instance segmentation

  • Export Branch Graph to GraphML

  • Relative Movement Feature

• Mastodon Deep Lineage Release 0.2.0

  • Two new similarity measures for hierarchical clustering of lineage trees

  • New UI elements in hierarchical clustering of lineages result view

  • SVG/PNG Export of lineage classification result

  • Similarity of two trees

  • Performance benchmark