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Mastodon Track analysis, import and export add-ons (DeepLineage)
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    Mastodon
    • Mastodon documentation
    Mastodon
    • A. Using Mastodon
    • Getting started with Mastodon. Automated tracking.
    • Manually editing tracks in Mastodon. TrackScheme.
    • Inspecting large datasets.
    • Numerical features and tags. The table and grapher view.
    • Semi-automated tracking.
    • The selection creator.
    • Scripting Mastodon in Fiji.
    • Video Tutorials
    • B. Keyboard shortcuts tables
    • Moving around in the BDV views.
    • Editing spots and links in the BDV views.
    • Moving around in the TrackScheme views.
    • Editing spots and links in the TrackScheme views.
    • Shortcuts for the table views.
    • Navigation through lineages in BDV and TrackScheme views.
    • Setting the selection.
    • C. Mastodon functionalities
    • Existing plugins
    • CSV Importer
    • GraphML Importer
    • Statistics on nearest neighbors
    • Spot trajectory image extractor
    • Track analysis, import and export add-ons (DeepLineage)
      • Show Source
      • Installation Instructions
      • Numerical Features added to Mastodon
      • Hierarchical Clustering of Lineage Trees
      • Dimensionality reduction
      • Import
      • Export
    • Track editing, analysis and export add-ons (Tomancak)
    • Interactive 3D viewer for tracking data (Blender View)
    • D. Extending Mastodon
    • Mastodon data structures.
    • Creating custom plugins in Mastodon.
    • Custom simple numerical features in Mastodon.
    • Creating custom detectors in Mastodon.
    • E. Technical information
    • Mastodon numerical features.
    • The graph data structure of Mastodon.
    • Containment in Convex Polytopes using k-D trees.
    • Scripting functions
    • Show Source

    Track analysis, import and export add-ons (DeepLineage)ΒΆ

    License DOI YouTube
    • Installation Instructions
    • Numerical Features added to Mastodon
      • Spot Features
      • Branch Features
    • Hierarchical Clustering of Lineage Trees
      • Zhang Tree Edit Distance
      • Workflow
      • Parameters
      • Example
    • Dimensionality reduction
      • Usage
      • Description
      • Parameters
      • Example
    • Import
      • Import Spots from Segmented Label Image
    • Export
      • Label Image Export
      • GraphML Export
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    © Copyright 2022 - 2025, Jean-Yves Tinevez.
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