Export measurements

Export spot counts per lineage

  • Menu Location: File > Export > Export measurements > Spot counts > Export spot counts per lineage

  • Export spots counts per lineage per time point.

  • If spots are selected, only lineages with selected spots are included, otherwise all lineages are included.

  • Results in one CSV file per lineage.

  • Example: export_spot_counts_per_lineage.png

Export spot counts per time point

  • Menu Location: File > Export > Export measurements > Spot counts > Export spot counts per time point

  • This command writes the time point and the number of spots at each time point to a single CSV file.

  • Example: export_spot_counts_per_time_point.png

Export division counts per time point

  • Menu Location: File > Export > Export measurements > Export division counts per time point

  • This command writes the time point and the number of divisions at each time point to a single CSV file.

  • A division is defined as a spot with more than one outgoing edge.

  • Example: export_division_counts_per_time_point.png

Export phyloXML for selected spot

  • Menu Location: File > Export > Export phyloXML for selected spot

  • Export the subtree of the selected spot in phyloXML format.

  • The phyloXML format is a standard for representing phylogenetic trees: phyloxml.org