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C
clear() (Java method)
closeAllWindows() (Java method)
computeFeatures() (Java method)
computeFeatures(boolean, String) (Java method)
computeFeatures(String) (Java method)
createBigDataViewer() (Java method)
createBigDataViewer(Map) (Java method)
createBranchBigDataViewer() (Java method)
createBranchBigDataViewer(Map) (Java method)
createBranchTrackScheme() (Java method)
createBranchTrackScheme(Map) (Java method)
createGrapher() (Java method)
createGrapher(Map) (Java method)
createHierarchyTrackScheme() (Java method)
createHierarchyTrackScheme(Map) (Java method)
createTable(boolean) (Java method)
createTable(Map) (Java method)
createTag(String, String) (Java method)
createTrackMate() (Java method)
createTrackScheme() (Java method)
createTrackScheme(Map) (Java method)
D
deleteSelection() (Java method)
detect(double, double) (Java method)
E
echo() (Java method)
echo(int) (Java method)
editTagSets() (Java method)
F
forEachBdvView(Consumer) (Java method)
forEachBranchTrackSchemeView(Consumer) (Java method)
forEachBranchView(Consumer) (Java method)
forEachGrapherView(Consumer) (Java method)
forEachTableView(Consumer) (Java method)
forEachTrackSchemeView(Consumer) (Java method)
forEachView(Consumer) (Java method)
G
getBdvWindows() (Java method)
getLogger() (Java method)
getModel() (Java method)
getSelectionModel() (Java method)
getWindowManager() (Java method)
I
info() (Java method)
,
[1]
infoDetectors() (Java method)
infoFeatures() (Java method)
infoLinkers() (Java method)
infoTags() (Java method)
L
link(double, int) (Java method)
M
Mamut (Java class)
N
newProject(String) (Java method)
newProject(String, Context) (Java method)
O
open(String) (Java method)
open(String, Context) (Java method)
openOnlineDocumentation() (Java method)
org.mastodon.mamut (package)
R
redo() (Java method)
resetDetectorSettings() (Java method)
resetLinkerSettings() (Java method)
resetSelection() (Java method)
run() (Java method)
S
save() (Java method)
saveAs(String) (Java method)
select(String) (Java method)
setDetectorSetting(String, Object) (Java method)
setLinkerSetting(String, Object) (Java method)
setLogger(Logger) (Java method)
setTagColor(String, String, int, int, int) (Java method)
T
tagSelectionWith(String, String) (Java method)
TrackMateProxy (Java class)
U
undo() (Java method)
useDetector(String) (Java method)
useLinker(String) (Java method)
W
WindowManager (Java class)
Table of Contents
A. Using Mastodon
Getting started with Mastodon. Automated tracking.
Manually editing tracks in Mastodon. TrackScheme.
Inspecting large datasets.
Numerical features and tags. The table view.
Semi-automated tracking.
The selection creator.
Scripting Mastodon in Fiji.
B. Keyboard shortcuts tables
Navigating in the BDV views.
Navigating in the TrackScheme views.
Navigating in the table views.
Navigation with the Focus.
Setting the selection.
C. Extending Mastodon
Mastodon data structures.
D. Technical informmation
Mastodon numerical features.
The graph data structure of Mastodon.
Containment in Convex Polytopes using
k
-D trees.
Scripting functions
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