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Mastodon
Mastodon documentation
Mastodon
Mastodon
A. Using Mastodon
Getting started with Mastodon. Automated tracking.
Manually editing tracks in Mastodon. TrackScheme.
Inspecting large datasets.
Numerical features and tags. The table and grapher view.
Semi-automated tracking.
The selection creator.
Scripting Mastodon in Fiji.
Mastodon file format and cell tracking on remote images.
Customizing Mastodon’s main GUI windows
Video Tutorials
B. Keyboard shortcuts tables
Moving around in the BDV views.
Editing spots and links in the BDV views.
Moving around in the TrackScheme views.
Editing spots and links in the TrackScheme views.
Shortcuts for the table views.
Navigation through lineages in BDV and TrackScheme views.
Setting the selection.
Customizing Keymaps.
Command Finder.
C. Mastodon functionalities
Existing plugins
CSV Importer
GraphML Importer
Simi-BioCell importer
TGMM importer
Statistics on nearest neighbors
Spot trajectory image extractor
Track analysis, import and export add-ons (DeepLineage)
Track editing, analysis and export add-ons (Tomancak)
Interactive 3D viewer for tracking data (Blender View)
D. Extending Mastodon
Mastodon data structures.
Creating custom plugins in Mastodon.
Custom simple numerical features in Mastodon.
Creating custom detectors in Mastodon.
E. Technical information
Mastodon numerical features.
The graph data structure of Mastodon.
Containment in Convex Polytopes using
k
-D trees.
Scripting functions
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